3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13097

Details:

PFam ID : PF13097

PFam Domain Description : CENP-A nucleosome associated complex (NAC) subunit

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 20

Average sequence length: 146.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13097	F2UII1_9EUKA_136_232	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13097	Q0P4J4_XENTR_247_427	84

Sequence based PCA Plot of the family - PF13097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay