3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13094

Details:

PFam ID : PF13094

PFam Domain Description : CENP-A-nucleosome distal (CAD) centromere subunit

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 81

Average sequence length: 150.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13094	FTA7_SCHPO_64_234	60.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13094	FTA7_SCHPO_64_234	65

Sequence based PCA Plot of the family - PF13094 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay