3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13092

Details:

PFam ID : PF13092

PFam Domain Description : Kinetochore complex Sim4 subunit Fta1

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 58

Average sequence length: 166.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13092	B2W388_PYRTR_135_198	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13092	E3QSE4_COLGM_191_398	100

Sequence based PCA Plot of the family - PF13092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=24 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay