3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13088

Details:

PFam ID : PF13088

PFam Domain Description : BNR repeat-like domain

Number of Sequence in 50% Dataset : 351

Number of Sequence in Full Dataset : 850

Average sequence length: 262.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13088	E3QPE0_COLGM_141_406	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13088	A3RTT9_RALSO_1_60	99.6

Sequence based PCA Plot of the family - PF13088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay