3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13087

Details:

PFam ID : PF13087

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 632

Number of Sequence in Full Dataset : 2249

Average sequence length: 191.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13087	E3QPE0_COLGM_141_406	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13087	D8UA46_VOLCA_1083_1442	100

Sequence based PCA Plot of the family - PF13087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=103 Length=8
Motif3 Start=92 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay