3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13086

Details:

PFam ID : PF13086

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 846

Number of Sequence in Full Dataset : 2493

Average sequence length: 220.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13086	E3QPE0_COLGM_141_406	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13086	D9R6B9_CLOSW_713_1100	100

Sequence based PCA Plot of the family - PF13086 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=497 Length=11
Motif3 Start=24 Length=8
Motif4 Start=702 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay