3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13085

Details:

PFam ID : PF13085

PFam Domain Description : 2Fe-2S iron-sulfur cluster binding domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 1112

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13085	D0LKG4_HALO1_107_229	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13085	B9PZR3_TOXGO_44_189	100

Sequence based PCA Plot of the family - PF13085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=321 Length=8
Motif2 Start=184 Length=8
Motif3 Start=171 Length=8
Motif4 Start=223 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay