3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13084

Details:

PFam ID : PF13084

PFam Domain Description : Domain of unknown function (DUF3943)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 64

Average sequence length: 107.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13084	D0LKG4_HALO1_107_229	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13084	D0LKG4_HALO1_107_229	100

Sequence based PCA Plot of the family - PF13084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay