3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13083

Details:

PFam ID : PF13083

PFam Domain Description : KH domain

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 952

Average sequence length: 73.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13083	F0GW40_9FIRM_1_61	99.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13083	C8P926_9LACO_1_58	100

Sequence based PCA Plot of the family - PF13083 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay