3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13037

Details:

PFam ID : PF13037

PFam Domain Description : Domain of unknown function (DUF3898)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 18

Average sequence length: 80.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13037	C2XWX7_BACCE_1_32	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13037	Q9KBZ3_BACHD_261_351	100

Sequence based PCA Plot of the family - PF13037 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay