3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13029

Details:

PFam ID : PF13029

PFam Domain Description : Domain of unknown function (DUF3890)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 20

Average sequence length: 70.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13029	E0I4E1_9BACL_16_113	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13029	C0RQE7_9SPIO_1_75	100

Sequence based PCA Plot of the family - PF13029 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay