3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13023

Details:

PFam ID : PF13023

PFam Domain Description : HD domain

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 906

Average sequence length: 154.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13023	B1YEA0_EXIS2_174_213	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13023	F0VMJ7_NEOCA_37_237	100

Sequence based PCA Plot of the family - PF13023 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=17
Motif2 Start=1 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay