3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13021

Details:

PFam ID : PF13021

PFam Domain Description : Domain of unknown function (DUF3885)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 55

Average sequence length: 35.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13021	B1YEA0_EXIS2_174_213	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13021	D4K1S5_9FIRM_168_192	100

Sequence based PCA Plot of the family - PF13021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=18
Motif2 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay