3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13019

Details:

PFam ID : PF13019

PFam Domain Description : Telomere stability and silencing

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 131

Average sequence length: 139.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13019	A0CX15_PARTE_45_217	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13019	D3BKP1_POLPA_14_204	98.4

Sequence based PCA Plot of the family - PF13019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=50 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay