3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13018

Details:

PFam ID : PF13018

PFam Domain Description : Extended Signal Peptide of Type V secretion system

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 305

Average sequence length: 23.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13018	A6SW04_JANMA_1_24	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13018	A6SW04_JANMA_1_24	99.3

Sequence based PCA Plot of the family - PF13018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay