3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13016

Details:

PFam ID : PF13016

PFam Domain Description : Cys-rich Gliadin N-terminal

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 154

Average sequence length: 75.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13016	Q7X9M3_WHEAT_157_196	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13016	A9XEB9_SACOF_1_45	93.4

Sequence based PCA Plot of the family - PF13016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=19
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay