3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13015

Details:

PFam ID : PF13015

PFam Domain Description : Glucosidase II beta subunit-like protein

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 190

Average sequence length: 143.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13015	A0BWZ2_PARTE_61_165	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13015	D5G528_TUBMM_343_520	100

Sequence based PCA Plot of the family - PF13015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=76 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay