3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13013

Details:

PFam ID : PF13013

PFam Domain Description : F-box-like domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 34

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13013	F2T177_TRIRU_1_58	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13013	C4JGS7_UNCRE_3_80	69

Sequence based PCA Plot of the family - PF13013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay