3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13012

Details:

PFam ID : PF13012

PFam Domain Description : Maintenance of mitochondrial structure and function

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 413

Average sequence length: 116.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13012	E5S3H8_TRISP_155_269	57.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13012	B0WDP7_CULQU_113_185	71

Sequence based PCA Plot of the family - PF13012 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=58 Length=8
Motif3 Start=92 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay