3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13011

Details:

PFam ID : PF13011

PFam Domain Description : leucine-zipper of insertion element IS481

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 115

Average sequence length: 79.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13011	E2AS97_9HYME_12_82	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13011	E8L8F2_9RHIZ_1_85	99.1

Sequence based PCA Plot of the family - PF13011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=42 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay