3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13007

Details:

PFam ID : PF13007

PFam Domain Description : Transposase C of IS166 homeodomain

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 571

Average sequence length: 73.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13007	C5UWY6_CLOBO_7_58	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13007	A5W4H7_PSEP1_13_79	100

Sequence based PCA Plot of the family - PF13007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay