3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13006

Details:

PFam ID : PF13006

PFam Domain Description : Insertion element 4 transposase N-terminal

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 90

Average sequence length: 87.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13006	E6QCC6_9ZZZZ_1_35	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13006	Q2JAY9_FRASC_16_128	100

Sequence based PCA Plot of the family - PF13006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay