3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13005 Details: PFam ID : PF13005 PFam Domain Description : putative Helix-turn-helix domain of transposase IS66 Number of Sequence in 50% Dataset : 75 Number of Sequence in Full Dataset : 549 Average sequence length: 57.2 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13005E5V6U5_9BACE_140_245No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13005B8J7P5_ANAD2_86_14497.8 Sequence based PCA Plot of the family - PF13005 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=25 Length=18Motif2 Start=16 Length=8Motif3 Start=7 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF13005
PFam Domain Description : putative Helix-turn-helix domain of transposase IS66
Number of Sequence in 50% Dataset : 75
Number of Sequence in Full Dataset : 549
Average sequence length: 57.2
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER