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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13005
Details:

PFam ID : PF13005

PFam Domain Description : putative Helix-turn-helix domain of transposase IS66

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 549

Average sequence length: 57.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13005E5V6U5_9BACE_140_245No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13005B8J7P5_ANAD2_86_14497.8
Sequence based PCA Plot of the family - PF13005 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay