3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13004

Details:

PFam ID : PF13004

PFam Domain Description : Bacteroidetes-Associated Carbohydrate-binding Often N-terminal

Number of Sequence in 50% Dataset : 438

Number of Sequence in Full Dataset : 642

Average sequence length: 72.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13004	E5V6U5_9BACE_140_245	48.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13004	E5V6U5_9BACE_140_245	97.9

Sequence based PCA Plot of the family - PF13004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay