3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13002

Details:

PFam ID : PF13002

PFam Domain Description : Arrestin_N terminal like

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 57

Average sequence length: 174.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13002	A4HPT9_LEIBR_149_234	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13002	C9STS9_VERA1_68_257	98.2

Sequence based PCA Plot of the family - PF13002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay