3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13000

Details:

PFam ID : PF13000

PFam Domain Description : Acetyl-coenzyme A transporter 1

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 196

Average sequence length: 244.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13000	Q22PN8_TETTH_35_471	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13000	Q22PN8_TETTH_35_471	100

Sequence based PCA Plot of the family - PF13000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=151 Length=11
Motif3 Start=76 Length=14
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay