3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12999

Details:

PFam ID : PF12999

PFam Domain Description : Glucosidase II beta subunit-like

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 224

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12999	A2FMZ6_TRIVA_11_120	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12999	F0W8J3_9STRA_9_212	100

Sequence based PCA Plot of the family - PF12999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=29 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay