3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12998

Details:

PFam ID : PF12998

PFam Domain Description : Inhibitor of growth proteins N-terminal histone-binding

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 275

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12998	E2L599_MONPE_41_124	67.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12998	F0WFZ3_9STRA_391_512	99.6

Sequence based PCA Plot of the family - PF12998 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=93 Length=8
Motif2 Start=24 Length=8
Motif3 Start=78 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay