3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12997

Details:

PFam ID : PF12997

PFam Domain Description : Domain of unknown function, E. rectale Gene description (DUF3881)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 50

Average sequence length: 252.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12997	B7AU60_9BACE_5_316	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12997	B7AU60_9BACE_5_316	100

Sequence based PCA Plot of the family - PF12997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=242 Length=11
Motif3 Start=74 Length=8
Motif4 Start=302 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay