3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12996

Details:

PFam ID : PF12996

PFam Domain Description : DUF based on E. rectale Gene description (DUF3880)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 134

Average sequence length: 76.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12996	E1L4M9_9FIRM_87_162	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12996	E0S028_BUTPB_95_178	100

Sequence based PCA Plot of the family - PF12996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay