3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12995

Details:

PFam ID : PF12995

PFam Domain Description : Domain of unknown function, E. rectale Gene description (DUF3879)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 12

Average sequence length: 160.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12995	C4ZEC9_EUBR3_35_101	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12995	D4KS11_9FIRM_8_198	100

Sequence based PCA Plot of the family - PF12995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay