3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12994

Details:

PFam ID : PF12994

PFam Domain Description : Domain of unknown function, E. rectale Gene description (DUF3878)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 22

Average sequence length: 279.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12994	C4GBX1_9FIRM_10_321	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12994	C4GBX1_9FIRM_10_321	100

Sequence based PCA Plot of the family - PF12994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=133 Length=8
Motif2 Start=156 Length=8
Motif3 Start=32 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay