3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12992

Details:

PFam ID : PF12992

PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3876)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 44

Average sequence length: 91.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12992	C6IS40_9BACE_2_68	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12992	D5WNL0_BURSC_17_112	100

Sequence based PCA Plot of the family - PF12992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay