3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12990 Details: PFam ID : PF12990 PFam Domain Description : Domain of unknonw function from B. Theta Gene description (DUF3874) Number of Sequence in 50% Dataset : 13 Number of Sequence in Full Dataset : 56 Average sequence length: 71.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12990F2KVJ8_9BACT_344_41850 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12990F2KVJ8_9BACT_344_418100 Sequence based PCA Plot of the family - PF12990 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=28 Length=8Motif2 Start=19 Length=8Motif3 Start=10 Length=8Motif4 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF12990
PFam Domain Description : Domain of unknonw function from B. Theta Gene description (DUF3874)
Number of Sequence in 50% Dataset : 13
Number of Sequence in Full Dataset : 56
Average sequence length: 71.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER