3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12989

Details:

PFam ID : PF12989

PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3873)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 30

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12989	B0THZ4_HELMI_6_61	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12989	B0THZ4_HELMI_6_61	96.5

Sequence based PCA Plot of the family - PF12989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay