Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12988
Details:

PFam ID : PF12988

PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3872)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 69

Average sequence length: 130.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12988D1XV38_9BACT_1_3542.8
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF12988D4IKG3_9BACT_1_141100
Sequence based PCA Plot of the family - PF12988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=23 Length=18
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay