3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12988 Details: PFam ID : PF12988 PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3872) Number of Sequence in 50% Dataset : 8 Number of Sequence in Full Dataset : 69 Average sequence length: 130.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12988D1XV38_9BACT_1_3542.8 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF12988D4IKG3_9BACT_1_141100 Sequence based PCA Plot of the family - PF12988 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=10 Length=11Motif2 Start=1 Length=8Motif3 Start=23 Length=18 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF12988
PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3872)
Number of Sequence in 50% Dataset : 8
Number of Sequence in Full Dataset : 69
Average sequence length: 130.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER