3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12987

Details:

PFam ID : PF12987

PFam Domain Description : Domain of unknown function, B. Theta Gene description (DUF3871)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 45

Average sequence length: 269.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12987	C6IV07_9BACE_1_54	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12987	E2NH52_9BACE_1_191	100

Sequence based PCA Plot of the family - PF12987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay