3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12980

Details:

PFam ID : PF12980

PFam Domain Description : Domain of Unknown Function with PDB structure (DUF3864)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 65

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12980	A6EGC2_9SPHI_54_404	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12980	E8UZG3_TERSS_394_473	100

Sequence based PCA Plot of the family - PF12980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay