3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12979

Details:

PFam ID : PF12979

PFam Domain Description : Domain of Unknown Function with PDB structure (DUF3863)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 291.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12979	A6EGC2_9SPHI_54_404	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12979	A6EGC2_9SPHI_54_404	100

Sequence based PCA Plot of the family - PF12979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay