3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12974

Details:

PFam ID : PF12974

PFam Domain Description : ABC transporter, phosphonate, periplasmic substrate-binding protein

Number of Sequence in 50% Dataset : 470

Number of Sequence in Full Dataset : 1343

Average sequence length: 235.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12974	Q15YH4_PSEA6_55_222	58.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12974	A0LP11_SYNFM_56_274	99.9

Sequence based PCA Plot of the family - PF12974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay