3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12973

Details:

PFam ID : PF12973

PFam Domain Description : ChrR Cupin-like domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 556

Average sequence length: 88.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12973	Q0K6U6_CUPNH_39_139	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12973	Q0K6U6_CUPNH_39_139	100

Sequence based PCA Plot of the family - PF12973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=18
Motif2 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay