3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12972

Details:

PFam ID : PF12972

PFam Domain Description : Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 163

Average sequence length: 253.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12972	A6QM01_BOVIN_473_557	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12972	C5BWA9_BEUC1_450_742	100

Sequence based PCA Plot of the family - PF12972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay