3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12970

Details:

PFam ID : PF12970

PFam Domain Description : Domain of Unknown Function with PDB structure (DUF3858)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 11

Average sequence length: 104.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12970	F2I9N8_9FLAO_56_172	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12970	D7IK65_9BACE_399_516	100

Sequence based PCA Plot of the family - PF12970 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay