3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12969

Details:

PFam ID : PF12969

PFam Domain Description : Domain of Unknown Function with PDB structure (DUF3857)

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 245

Average sequence length: 167.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12969	F2I9N8_9FLAO_56_172	57.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12969	B5JHU8_9BACT_666_792	100

Sequence based PCA Plot of the family - PF12969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay