3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12965

Details:

PFam ID : PF12965

PFam Domain Description : Domain of unknown function (DUF3854)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 143

Average sequence length: 115.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12965	B2JBL8_NOSP7_516_606	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12965	Q027Z8_SOLUE_117_261	100

Sequence based PCA Plot of the family - PF12965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=43 Length=8
Motif3 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay