3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12961

Details:

PFam ID : PF12961

PFam Domain Description : Domain of Unknown Function with PDB structure (DUF3850)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 63

Average sequence length: 72

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12961	C1I5G1_9CLOT_4_89	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12961	C1I5G1_9CLOT_4_89	100

Sequence based PCA Plot of the family - PF12961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=44 Length=8
Motif2 Start=20 Length=23
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay