3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12953

Details:

PFam ID : PF12953

PFam Domain Description : Domain of unknown function (DUF3842)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 72

Average sequence length: 127.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12953	D5GXQ3_LACCS_1_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12953	E4SHB8_CALK2_2_134	100

Sequence based PCA Plot of the family - PF12953 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=17
Motif2 Start=32 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay