3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12951

Details:

PFam ID : PF12951

PFam Domain Description : Autotransporter-associated beta strand repeat

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 2111

Average sequence length: 31.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12951	B0P230_9CLOT_586_718	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12951	C0A302_9BACT_416_435	73

Sequence based PCA Plot of the family - PF12951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay