3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12950

Details:

PFam ID : PF12950

PFam Domain Description : TaqI-like C-terminal specificity domain

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 313

Average sequence length: 142.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12950	B0P230_9CLOT_586_718	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12950	A7BSW7_9GAMM_10_113	99.3

Sequence based PCA Plot of the family - PF12950 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=2 Length=21
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay