3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12949

Details:

PFam ID : PF12949

PFam Domain Description : HeH/LEM domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 106

Average sequence length: 34.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12949	E1UCE2_LISML_1_31	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12949	B6JYS7_SCHJY_10_44	100

Sequence based PCA Plot of the family - PF12949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay